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SRX24271769: GSM8209519: WT_S2_9; Solanum lycopersicum; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 45.4M spots, 13.6G bases, 4Gb downloads

External Id: GSM8209519_r1
Submitted by: DISAFA, University of Turin
Study: Effects of strigolactones on tomato leaf transcriptome under irrigated and repeated water stress conditions
show Abstracthide Abstract
In response to environmental stressors, plants exhibit a phenomenon known as stress memory, whereby a prior stress episode influences their subsequent responses. This suggests the existence of a molecular memory mechanism that allows plants to adapt to recurring stress events. Previous work has highlighted the contribution of the phytohormone strigolactones to drought stress and memory thereof (10.1007/s00425-015-2266-8; 10.1111/nph.14190; 10.1111/pce.13758; 10.1093/pcp/pcac058). Additionally, there are sparse indications that especially (but not only) in Solanaceous plants, they may have a significant effect on reproduction (reviewed by 10.1111/pce.14461). However, the molecular underpinnings of both phenomena have not been researched yet. This study investigated the positioning of strigolactones to the tomato flowering network, and their contribution to drought memory. Overall design: We deep-sequenced total RNA from leaves of 3-week-old wt (M82 genotype) and strigolactone-depleted plants showing 70-80% reduction of strigolactone content in root tissues and exudates (SL-; line 6936 silenced in the CCD7 biosynthetic gene, kind gift by Dr. H. J. Klee, University of Florida, ). A total of 21 samples are included in the dataset, corresponding to 7 different conditions/treatments/genotypes each coming in 3 biological replicates; each biological replicate consisted of at least 3 fully expanded leaves (one per plant) from 5 plants per condition/treatment/genotype. The 7 kinds of samples are leaves from plants under: unstressed, irrigated conditions (control samples, both wt and SL- genotype - WT_WW and CC_WW); irrigated conditions after 1 drought episode (recovery 1, both for wt and SL- genotype - WT_S1 and CC_S1); irrigated conditions after 2 drought episodes ( (recovery 2, both for wt and SL- genotype - WT_S2 and CC_S2); unstressed, irrigated conditions but treated 24 h earlier with the synthetic strigolactone analogue GR245DS (wt only - WTTR24).
Sample: WT_S2_9
SAMN40981479 • SRS21037858 • All experiments • All runs
Library:
Name: GSM8209519
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was extracted from leaves using the Spectrum Plant Total RNA Kit (Sigma Aldrich). After digestion of contaminant DNA by DNAse I (ThermoScientific) at 37°C for 30 min, RNA quantity and quality were determined with a Nanodrop 2000 spectrophotometer (Thermo Fisher Scientific Inc., Wilmington, DE, United States). cDNA libraries were prepared from 1 µg total RNA using NEBnext Ultra TM RNA Library Prep Kit for Illumina (NEB, USA) following the manufacturer's recommendations. A total of 21 libraries (three each for wt and SL- leaves, plus wt treated with GR245DS) were constructed and quantified using a Qubit 2.9 fluorometer (Life Technologies) and sequenced on an Illumina platform to generate paired-end reads.
Runs: 1 run, 45.4M spots, 13.6G bases, 4Gb
Run# of Spots# of BasesSizePublished
SRR2870451845,356,92813.6G4Gb2024-04-17

ID:
32584296

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